scaLR Documentation
===================
.. image:: ../img/scaLR_logo.png
   :scale: 60%

.. include:: ../README.md
   :parser: myst_parser.sphinx_
   :start-line: 2
   :end-line: 24

.. image:: ../img/Schematic-of-scPipeline.jpg

.. include:: ../README.md
   :parser: myst_parser.sphinx_
   :start-line: 26

.. toctree::
   :maxdepth: 10
   :caption: scaLR
   :hidden:

   scalr.analysis
   scalr.data
   scalr.feature
   scalr.nn
   scalr.utils

.. toctree::
   :maxdepth: 10
   :caption: scaLR Pipelines
   :hidden:
   
   pipeline
   scalr.data_ingestion_pipeline
   scalr.feature_extraction_pipeline
   scalr.model_training_pipeline
   scalr.eval_and_analysis_pipeline